Supported Applications
Foldseek
-
Description
a program that enables fast and sensitive comparisons of large structure sets.
-
Usage
To list all executables provided by Foldseek, run:$ sbgrid-list foldseek -
Usage Notes
foldseek for Linux/Unix provides the following instruction set specific executables. The default, foldseek, is SSE2.
foldseek
foldseek.arm64
foldseek.avx2
foldseek.sse2
foldseek.sse41
foldseek.ppc64le-POWER8
foldseek.ppc64le-POWER9
-
Installation
Use the following command to install this title with the CLI client:$ sbgrid-cli install foldseekAvailable operating systems: Linux 64, OS X INTEL -
Primary Citation*
M. van Kempen, S. S. Kim, C. Tumescheit, M. Mirdita, J. Söding, and M. Steinegger. 2022. Foldseek: fast and accurate protein structure search. bioRxiv, doi:10.1101/2022.02.07.479398.
-
*Full citation information available through
-
-
Webinars
Topic: Fast and accurate protein structure search with Foldseek
Presenter: Prof. Martin Steinegger, Asst Professor of Bioinformatics, Seoul National University
Host: Pete Meyer
Recorded on Feb 14, 2023
For more information on Foldseek: https://github.com/steineggerlab/foldseek
-
Keywords
Structural Biology, Structure Visualization & Analysis, Visualization
-
Default Versions
Linux 64: 8-ef4e960 (308.2 MB)
OS X INTEL: 8-ef4e960 (52.9 MB) -
Other Versions
Linux 64:
1.3c64211 (83.8 MB) , 5-53465f0 (337.4 MB) -
OS X INTEL:
1.3c64211 (39.8 MB) , 5-53465f0 (46.2 MB)